Where to plug in ESC's on the servo rail

I have been hunting for a straight answer with no success lol…How do you know which channel to plug each ESC into on the servo rail? Do you set up motor 1,2,3, etc somewhere in the software? Im really confused…I hope that i’m just missing something obvious. Im running a hex frame with DJI 30A opto esc’s. Thanks in advance!

https://docs.emlid.com/navio2/Navio-APM/hardware-setup/

And for the order (Motor & ESC)

http://ardupilot.org/copter/docs/connect-escs-and-motors.html

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