If the base is averaged in Single, its position is only a few meters accurate. In this case, longer averaging in the single mode won’t increase the accuracy.
Are you also planning to post-process the data to tie the measurements to global coordinates? Or do you only need relative accuracy for your projects?
Yes, with PPK, averaging it longer will not improve its accuracy.
RINEX observation file typically contains raw observation data from the GNSS receivers, including pseudorange, carrier phase, Doppler, and signal-to-noise ratio (SNR) measurements. This raw data is uncorrected and represents the signals received directly from the satellites without post-processing.
Also, the base position in the RINEX header is the last averaged epoch coordinate with an accuracy of a few meters. It is different from the one averaged in Emlid Flow. Thus, your RTK and PPK base positions may differ by several meters.